Learning Resources
Spatial Transcriptomics
Spatial Transcriptomics
[微信公众号] 国家基因库大数据平台
[微信公众号] 生信编程自修室
> ST 系列教程贴子 + 微信公众号配套资源 【详见百度网盘文件夹，内含全部代码】
ST 分析工具盘点
> Spatial Transcriptomics: 5 tools to visualize your scRNA-seq data [2023-08/20]
Gitto [2019]
& in situ hybridization (seqFISH+, merFISH, osmFISH)
& sequencing (Slide-seq, Visium, STARmap)
& imaging-based multiplexing/proteomics (CyCIF, MIBI, CODEX)
BayesSpace [2021]
& SingleCellExperiment
& Visium (enhanced resolution)
> 空间转录组分析工具合辑（上）：去卷积 [2022-Jan]
> 空间转录组工具合辑（下）：聚类 [2022-Jan]
> 10款空间转录组去卷积工具的综合比较 [2022-Jul]
Ref: A comprehensive comparison on cell-type composition inference for spatial transcriptomics data
> 空间转录组细胞类型聚类方法综合比较 [2022-Nov]
Ref: Benchmarking cell-type clustering methods for spatially resolved transcriptomics data